When Neo tries unsucessfully at shooting the Agent, (on the rooftop) he drops the guns and starts to dodge the bullets. But when the bullet-time goes around, the guns, that he dropped in front are gone. Then, when he grazed by the bullet and falls, the guns are there. Uhm?
And then, there's Trinity's gloves. She doesn't have gloves the entire lobby scene. Then, notice when she is stearing the helicopter and shifts the gear, she has black, leather gloves. Now where did those come from?
One last thing. If you know anything about Keanu Reeves, you know that he enjoys driving those Nortons of his really fast. You would also know that he has a large scar above his naval. (It looks like a really messed up C-Section, you know, for a baby? lol) Apparently, the producers didn't want to show his scar when they did the interogation scene. (He does not has his scar.)