notice where Neo kills the last guard in the major gunfight in the loby where Morpheus is(End of DVD: Lobby Shooting Spree chapter), this also applies to all other guards who died in the gunfight.
He should be right in front of the elevator, right? When the explosion occurs, look at the floor,(the ground seems rather clean aye?) there are apparently no bodies there.
What happened? the cleaners must really be efficient, clear up the bodies and a bit of the debris for YOUR viewing pleasure.
Please correct me if there are any errors here.